WAVESPEED AI MOLECULE VIEWER Structures stay on your device
100% FREE

Free 3D Molecule ViewerRotate, colour, measure.

Open small molecules and proteins in 3D, switch between ball and stick, space-filling and cartoon, and add a surface.
Measure distances, angles and dihedrals, or build a 3D model from a 2D drawing.

PDB · mmCIF · SDF · MOL2 · XYZMeasure in Å and degreesFiles stay on your device
No sign-up No upload Nothing to install

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Drawings and files are processed in your browser and never uploaded.The chemistry engine downloads once (about 3 MB) and is then cached.
THREE SIMPLE STEPS

How to use the Molecule Viewer

01

Open a file

Drop a PDB, mmCIF, SDF, MOL, MOL2 or XYZ file onto the viewer, or try a sample molecule.

02

Style and explore

Choose a style and colouring, turn on the surface or labels, and rotate, zoom and click atoms or residues.

03

Measure and save

Pick atoms to measure distances, angles and dihedrals, then save a PNG image.

WaveSpeed AI

Make visuals for your chemistry.

Turn molecules into illustrations, cover art and explainer clips for slides, papers and lessons with WaveSpeed AI.

  • 1,000+ AI models
  • Image, video and 3D
  • Pay as you go

$1 in free credits for eligible new accounts. No card needed. Generators have separate account and credit requirements. The structure drawer is free.

Molecule Viewer FAQ

Is this molecule viewer free?

Yes, with no account and no limits beyond your device's memory.

Are my files uploaded?

No. Files are read in your browser; only the viewer's code is downloaded from a public code library.

Can I make a 3D model from a drawing?

Yes. Draw the molecule or paste a SMILES in the 2D tab and choose View in 3D; the model keeps the drawing's stereochemistry and is relaxed with the MMFF94 force field.

Which styles are available?

Ball and stick, sticks, space-filling and wireframe for any structure, plus cartoon for proteins and nucleic acids, with colouring by element, chain, residue, secondary structure, B-factor or sequence position.

All Free Tools

Free 3D Molecule Viewer

PDB · mmCIF · SDF · MOL2 · XYZ · Measure in Å and degrees · Files stay on your device

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